Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs2017932 chr22:18439190 C/A 9.6E-7 488 30.8 32.22 26.2 KM Plot
PRAD rs201868277 chr2:242639391 TTTAAA/T 9.95E-5 477 30.53 31.8 29.63 KM Plot
PRAD rs201931739 chr5:154274895 G/GGA 4.81E-14 494 30.08 35.57 6.3 KM Plot
PRAD rs202020222 chr10:70371925 CA/C 1.62E-5 485 30.8 30.33 29.17 KM Plot
PRAD rs2026138 chr9:72870824 T/G 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs2034357 chr2:107454575 G/A 0.000138 491 30.73 31.2 32.63 KM Plot
PRAD rs2039363 chr1:6724249 G/A 0.000129 493 29.97 31.27 30.73 KM Plot
PRAD rs2039364 chr1:6724457 A/G 0.000129 493 29.97 31.27 30.73 KM Plot
PRAD rs2053601 chr22:18448605 G/C 3.96E-6 493 30.8 31.87 26.58 KM Plot
PRAD rs2053835 chr11:6953456 A/G 7.62E-8 487 31.07 28.62 28.57 KM Plot
PRAD rs2057007 chr1:6286421 A/T 0.000147 487 30.78 31.37 24.2 KM Plot
PRAD rs2073614 chr19:50001499 A/G 1.47E-6 494 30.73 32.9 26.47 KM Plot
PRAD rs2075276 chr22:21363744 C/T 0.00012 494 31.05 31.27 28.8 KM Plot
PRAD rs2076306 chr6:52946215 G/A 8.1E-12 484 31.27 30.07 19.43 KM Plot
PRAD rs2081567 chr1:93873360 G/A 6.66E-16 489 16.82 28.22 31.37 KM Plot